Bioinformatics Analyst Resume Example
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BIOINFORMATICS ANALYST
Professional Summary
Holds diverse knowledge and experience in multi-omic in silico research. Learns new concepts quickly, working well under pressure, and communicating ideas clearly and effectively.
Skills
| Omic Data Analysis Pipeline Development Database Implementation | Multi-omics Data Integration High Performance Computing Cloud Computing |
Work History
Bioinformatics Analyst, 09/2013 to Current
Invitae – Cambridge , MA
U54 Multi-omics Profiling of Breast Cancer Cell Lines
Invitae – Cambridge , MA
U54 Multi-omics Profiling of Breast Cancer Cell Lines
- Managed and organized data collected from each project and core. Collaborated with chemists to optimize analysis procedure.
- Annotated differentially expressed metabolites based on multiple annotation databases; prioritized list of putative metabolites for experimental validation.
- Developed portals for information visualization (in-house Metabolic-Protein Interaction informative database) and analyzed networks of differentially expressed genes and metabolites.
- Provided pathway enrichment for biological interpretation.
- Performed integrative analysis of RNA-seq and Lipidomics data.
- Supported the development and dissemination of standards-based software tools for data visualization.
Student Researcher, 07/2013 to 08/2013
Ucla Health – Santa Monica , CA
CAN-zip: centroid based compression of next generation sequencing data using arithmetic encoding
Ucla Health – Santa Monica , CA
CAN-zip: centroid based compression of next generation sequencing data using arithmetic encoding
- Co-designed and coordinated NGS data compression project.
- Collaborated with computer scientists for pipeline implementation.
- Investigated and evaluated clustering algorithms to optimize compression ratio.
Graduate Research Assistant, 10/2012 to 06/2013
University Of Minnesota – Minneapolis , MN
Evolutionary Prioritization of protein post-translational modifications
University Of Minnesota – Minneapolis , MN
Evolutionary Prioritization of protein post-translational modifications
- Achieved designing, developing and implementing the complete pipeline and analyzed the conservation status of Post-translational Modifications among Human and other mammal orthologs.
- Collected, compiled and evaluated data from various Post-translational Modifications (PTMs) databases.
- Designed in-house PTMs informative databases which integrated PTMs data with Protein Ontology data.
- Developed bioinformatics pipeline to automate sequence alignment based PTMs conservation status checking.
- Detected potential PTMs in Human, Mouse and Rat proteins.
- Designed web interface with access to database and discovered properties of non-conserved PTMs.
Education
Master of Science: Bioinformatics, 2013
Georgetown University - City
GPA 3.95/4.0
Merit-based Scholarship (2012).
Officer, Public Relation Department, Georgetown University Chinese Students and Scholars Association (2012-2013)
Georgetown University - City
GPA 3.95/4.0
Merit-based Scholarship (2012).
Officer, Public Relation Department, Georgetown University Chinese Students and Scholars Association (2012-2013)
Bachelor of Science: Bioengineering, 2012
Northwest A&F University -
GPA 3.59/4.0 (Evaluated by WES)
Second Level Scholarship and Excellent Student Leader (2008-2009).
Served as first debater in 3 competitions, earned highest score in 2 matches (2008-2010).
Northwest A&F University -
GPA 3.59/4.0 (Evaluated by WES)
Second Level Scholarship and Excellent Student Leader (2008-2009).
Served as first debater in 3 competitions, earned highest score in 2 matches (2008-2010).
Additional Information
Operating Systems: Linux (RedHat/Ubuntu), Windows, MacOS.
High Performance Computing: PBS (Dell Shadowfax).
Programming Languages: Python, Perl, R, SAS, PHP, HTML, CSS.
Database Programming: MySQL, SQLite.
Databases: GenBank, RefSeq, ENSEMBL, dbSNP, GO, Uniprot, String
Software: BLAST, Galaxy, Samtools, Tophat, UCSC Genome Browser, BWA, Virtual Box, Cytoscape, XAMPP, WEKA.
Languages: Fluent in Mandarin.
High Performance Computing: PBS (Dell Shadowfax).
Programming Languages: Python, Perl, R, SAS, PHP, HTML, CSS.
Database Programming: MySQL, SQLite.
Databases: GenBank, RefSeq, ENSEMBL, dbSNP, GO, Uniprot, String
Software: BLAST, Galaxy, Samtools, Tophat, UCSC Genome Browser, BWA, Virtual Box, Cytoscape, XAMPP, WEKA.
Languages: Fluent in Mandarin.
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Resume Overview
School Attended
- Georgetown University
- Northwest A&F University
Job Titles Held:
- Bioinformatics Analyst
- Student Researcher
- Graduate Research Assistant
Degrees
- Master of Science : Bioinformatics , 2013
Bachelor of Science : Bioengineering , 2012
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