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Bioinformatics Analyst Resume Example

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BIOINFORMATICS ANALYST
Professional Summary
Holds diverse knowledge and experience in multi-omic in silico research. Learns new concepts quickly, working well under pressure, and communicating ideas clearly and effectively. 
Skills
Omic Data Analysis
Pipeline Development
Database Implementation
Multi-omics Data Integration
High Performance Computing
Cloud Computing
Work History
Bioinformatics Analyst, 09/2013 to Current
Invitae – Cambridge , MA
U54 Multi-omics Profiling of Breast Cancer Cell Lines
  • Managed and organized data collected from each project and core. Collaborated with chemists to optimize analysis procedure.
  • Annotated differentially expressed metabolites based on multiple annotation databases; prioritized list of putative metabolites for experimental validation.
  • Developed portals for information visualization (in-house Metabolic-Protein Interaction informative database) and analyzed networks of differentially expressed genes and metabolites.
  • Provided pathway enrichment for biological interpretation.
ICBI Aging Multi-omics Study
  • Performed integrative analysis of RNA-seq and Lipidomics data.
  • Supported the development and dissemination of standards-based software tools for data visualization.
Student Researcher, 07/2013 to 08/2013
Ucla Health – Santa Monica , CA
CAN-zip: centroid based compression of next generation sequencing data using arithmetic encoding
  • Co-designed and coordinated NGS data compression project.
  • Collaborated with computer scientists for pipeline implementation.
  • Investigated and evaluated clustering algorithms to optimize compression ratio. 
Graduate Research Assistant, 10/2012 to 06/2013
University Of Minnesota – Minneapolis , MN
Evolutionary Prioritization of protein post-translational modifications
  • Achieved designing, developing and implementing the complete pipeline and analyzed the conservation status of Post-translational Modifications among Human and other mammal orthologs.
  • Collected, compiled and evaluated data from various Post-translational Modifications (PTMs) databases.
  • Designed in-house PTMs informative databases which integrated PTMs data with Protein Ontology data.
  • Developed bioinformatics pipeline to automate sequence alignment based PTMs conservation status checking.
  • Detected potential PTMs in Human, Mouse and Rat proteins.
  • Designed web interface with access to database and discovered properties of non-conserved PTMs.
Education
Master of Science: Bioinformatics, 2013
Georgetown University - City
GPA 3.95/4.0
Merit-based Scholarship (2012).
Officer, Public Relation Department, Georgetown University Chinese Students and Scholars Association (2012-2013)
Bachelor of Science: Bioengineering, 2012
Northwest A&F University -
GPA 3.59/4.0 (Evaluated by WES)
Second Level Scholarship and Excellent Student Leader (2008-2009).
Served as first debater in 3 competitions, earned highest score in 2 matches (2008-2010).
Additional Information
Operating Systems: Linux (RedHat/Ubuntu), Windows, MacOS.
High Performance Computing: PBS (Dell Shadowfax).
Programming Languages: Python, Perl, R, SAS, PHP, HTML, CSS.
Database Programming: MySQL, SQLite.
Databases: GenBank, RefSeq, ENSEMBL, dbSNP, GO, Uniprot, String
Software: BLAST, Galaxy, Samtools, Tophat, UCSC Genome Browser, BWA, Virtual Box, Cytoscape, XAMPP, WEKA.
Languages: Fluent in Mandarin.
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Resume Overview

School Attended

  • Georgetown University
  • Northwest A&F University

Job Titles Held:

  • Bioinformatics Analyst
  • Student Researcher
  • Graduate Research Assistant

Degrees

  • Master of Science : Bioinformatics , 2013
    Bachelor of Science : Bioengineering , 2012

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